Not sure if you placed the Google Analytics code into your site properly?
SiteScan provides you an audit of how well you have applied Google Analytics to your site. I have only run the tool on a few sites, but it seems to provide good results and has pointed out a few pages where we missed adding the code.
This tool is referenced in the Google Analytics help documents, but not 'officially' recommended. Definitely worth a try to help ensure you're getting the most out of Google Analytics.
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